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ABOUT THIS RECORD

ID: MNEST004348
species: Oryza sativa
miRNA family: MIR393
source: miRNEST

Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCCAAAGGGATCGCATTGATC

miRNA*
TCATGCGATCCTTTTGGAGG

mismatches: 0
bulges: 1

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pre-miRNA
TGTCTTGGGGAAGCATCCAAAGGGATCGCATTGATCCTTCATCGCTCTCGCTCGCTTCCATGGCGGTCGTCGTCTACAAGCAGCTTGACGGATCATGCGA
TCCTTTTGGAGG
CTTCCTCTAGCC


dot-bracket secondary structure
...((.((((((((.((((((((((((((((.(((((.(((........(((.((((....(((((...)))))...))))))).))).)))))))))))
)))))))))).)
))))))).))..



SIMILARITIES
miRBase osa-MIR393: 8e-61

PMRD osa-miR393: 8e-61

microPC miR393: 7e-49
UniProt no hits

RFAM no hits
most similar mature miRNAs

Identical with: osa-MIR393 from miRBase (MNEST041997)

MORE

miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
Source sequences
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deep sequencing data evidence





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