ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR393
source: miRNEST
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCCAAAGGGATCGCATTGATC miRNA* TCAGTGCAATCCCTTTGGAAT mismatches: 1 bulges: 0 |
pre-miRNA
CTGAGGAAACTAGTGGAGGACTCCAAAGGGATCGCATTGATCTGGCTAGCTATCTCGATCGATCGCCTCATCGATCGACGACGACGTGCGTGATCGATCA
GTGCAATCCCTTTGGAATTTTCCTCTTGCTTCCGCC
dot-bracket secondary structure
....((((...((.((((((.(((((((((((.(((((((((......((..(((((.(((((((......)))))))))).))...))......)))))
)))).))))))))))).)))))).))...))))...
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
Source sequences
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deep sequencing data evidence
CTGAGGAAACTAGTGGAGGACTCCAAAGGGATCGCATTGATCTGGCTAGCTATCTCGATCGATCGCCTCATCGATCGACGACGACGTGCGTGATCGATCA
GTGCAATCCCTTTGGAATTTTCCTCTTGCTTCCGCC
dot-bracket secondary structure
....((((...((.((((((.(((((((((((.(((((((((......((..(((((.(((((((......)))))))))).))...))......)))))
)))).))))))))))).)))))).))...))))...
SIMILARITIES| miRBase osa-MIR393b: 6e-68 PMRD osa-miR393b: 6e-68 microPC miR393: 4e-44 | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
Source sequences
download this record
deep sequencing data evidence
