miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Back to search results



ABOUT THIS RECORD

ID: MNEST004353
species: Oryza sativa
miRNA family: MIR1120
source: miRNEST

Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
ACTCTCTCCGTCCCAAAATAT

miRNA*
ATTTTGGGACGGAGGTAGTAG

mismatches: 1
bulges: 0

View larger
pre-miRNA
TCTACTATAGTACTCTCTCCGTCCCAAAATATAAGCATTTTAGCTATGAATCTGGATAACTGTGCGTTCAGATTCATAGTCCAAAGTTGTTATATTTTGG
GACGGAGGTAGTAG
TTAATTGC


dot-bracket secondary structure
..........((((.(((((((((((((((((((.((.(((.(((((((((((((((........)))))))))))))))...))).)))))))))))))
)))))))).)))).
........



SIMILARITIES
miRBase osa-MIR1439: 0.000006

PMRD osa-miRf10603-akr: 0.0000000000001

microPC miR1439: 0.00009
UniProt no hits

RFAM MIR1122: 7e-43
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record





Liczniki na strone;