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ABOUT THIS RECORD
ID:
MNEST004355
species:
Oryza sativa
miRNA family:
MIRf341
source:
miRNEST
Taxonomy by NCBI:
Oryza sativa
Oryza
Oryzeae
Ehrhartoideae
BEP clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
ATACTCTCTCCGTCCCAAAAT
miRNA*
TTAGGGATGGAGGGAGTAGTA
mismatches:
3
bulges:
0
View larger
pre-miRNA
ATTTTTAAAAAAGTCAACGGTGTTAAACAT
TTAGGGATGGAGGGAGTAGTA
CAGTCCACTACTAGCTCCACCAGTTCATCTATAGCTAATCTAATAGCCA
ATTCATACAATAGTTGCTTACTATATTATTAATATATAGTCCCACCTATCATACGTACACTGCGTCTTGGAGTCCGTGCTGCAGCTGGCTACAGATCTAT
AGTCCGCTGCTCTTCTCTCTCATCTTTTATTTTATTAAAATATGTTTATAGCTGACTAATAGCTTGCTATTGTACCTGCTCTTATGGCACCCTCGATGTA
TA
ATACTCTCTCCGTCCCAAAAT
AGTTGTTTTTTTATTAAATTTTATCCT
dot-bracket secondary structure
((((.((((((((.((((.((.....)).(
((.(((((((((((((((.((
.(((.....))).(((.....))).((((....((((...(((.(((..
.....(((((((((.(((...((((((...))))))(((((....((((((.((((.....))))..))(((........(((((.(((((........)
)))).)))))......))).(((.(((((......))))).)))...))))..)))))..)))..)))))))))...))).)))))))......))))..
))
.))))))))))))))).))).
.))))))))))))..))))........
SIMILARITIES
miRBase
osa-MIR806h
:
0.00000002
PMRD
osa-miRf10777-akr
:
4e-28
microPC
no hits
UniProt
no hits
RFAM
MIR806: 0.000000000000006
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
not a miRNA
Source sequences
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