miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

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ABOUT THIS RECORD

ID: MNEST004355
species: Oryza sativa
miRNA family: MIRf341
source: miRNEST

Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
ATACTCTCTCCGTCCCAAAAT

miRNA*
TTAGGGATGGAGGGAGTAGTA

mismatches: 3
bulges: 0

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pre-miRNA
ATTTTTAAAAAAGTCAACGGTGTTAAACATTTAGGGATGGAGGGAGTAGTACAGTCCACTACTAGCTCCACCAGTTCATCTATAGCTAATCTAATAGCCA
ATTCATACAATAGTTGCTTACTATATTATTAATATATAGTCCCACCTATCATACGTACACTGCGTCTTGGAGTCCGTGCTGCAGCTGGCTACAGATCTAT
AGTCCGCTGCTCTTCTCTCTCATCTTTTATTTTATTAAAATATGTTTATAGCTGACTAATAGCTTGCTATTGTACCTGCTCTTATGGCACCCTCGATGTA
TAATACTCTCTCCGTCCCAAAATAGTTGTTTTTTTATTAAATTTTATCCT


dot-bracket secondary structure
((((.((((((((.((((.((.....)).(((.(((((((((((((((.((.(((.....))).(((.....))).((((....((((...(((.(((..
.....(((((((((.(((...((((((...))))))(((((....((((((.((((.....))))..))(((........(((((.(((((........)
)))).)))))......))).(((.(((((......))))).)))...))))..)))))..)))..)))))))))...))).)))))))......))))..
)).))))))))))))))).)))..))))))))))))..))))........



SIMILARITIES
miRBase osa-MIR806h: 0.00000002

PMRD osa-miRf10777-akr: 4e-28

microPC no hits
UniProt no hits

RFAM MIR806: 0.000000000000006
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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