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ABOUT THIS RECORD

ID: MNEST004360
species: Oryza sativa
miRNA family: MIR812
source: miRNEST

Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 GACGGACGGTCAAACGTTGGA

miRNA*
 CAACTTTGATTGTCCGTCTT

mismatches: 0
bulges: 1
View larger
pre-miRNA
 GTCAGATTATTAGCGGTCTACTCGCTCCGTCCCAAAAAAAGACAAACCCTGGGTTTCCGTGTCCAACTTTGATTGTCCGTCTTATATGAATTTTTTTTAT
AATTCGTATTTTCATTGTTGTTAGATGATAAAACATGATTAATATTTTATGCGTGACTTGTCTTTTTAATTTTTTTTTCATAATTTTTTCAAATAAGACG
GACGGTCAAACGTTGGACACGGAAACCAGAGTTTGTCTTTTTTTTGGACGGAGGGAGCATGCAGATGAAATTGAATA

dot-bracket secondary structure
.((((.(((((.(((.....(((.((((((((.((((((((((((((.((((.((((((((((((((((((((((((((((((((.((((..........
((((.((.((.(((((.......))))).)).)).(((..((....(((.....((....))....)))....))..))).))))..)))).))))))))
)))))))))).)))))))))))))))))).)))))))))))))).)))))))).)))..))).)))))..))))...


SIMILARITIES
miRBase osa-MIR812j: 0.00000000000006

PMRD osa-miRf10815-akr: 2e-35

microPC miR812: 2e-38		UniProt no hits

RFAM MIR806: 4e-40		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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