ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIRf842
source: miRNEST
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGGTATCACATGATACCTCAC miRNA* TAGGTATCATCTGATACCTCG mismatches: 3 bulges: 0 |
pre-miRNA
GGAATTACCTGATATCTGGTAGGTATCATCTGATACCTCGCAAGTATCACTCGATACGTGGGAGAAATCGTCTGATACCTGATAGGTATCACATGATACC
TCACGAGTATCACCCAATAC
dot-bracket secondary structure
((.....)).(((((.((..(((((((((.((((((((..((.((((((..((((...........))))..)))))).))..)))))))).))))))))
)..)).))))).........
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GGAATTACCTGATATCTGGTAGGTATCATCTGATACCTCGCAAGTATCACTCGATACGTGGGAGAAATCGTCTGATACCTGATAGGTATCACATGATACC
TCACGAGTATCACCCAATAC
dot-bracket secondary structure
((.....)).(((((.((..(((((((((.((((((((..((.((((((..((((...........))))..)))))).))..)))))))).))))))))
)..)).))))).........
SIMILARITIES| miRBase no hits PMRD osa-miRf10149-akr: 3e-29 microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
