ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIRf1423
source: miRNEST
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGTTTGGTTGGAGGGACTAAA miRNA* TAGTCCCTAGTTTCCAAACACC mismatches: 4 bulges: 1 |
pre-miRNA
TACTAAGGTGGTGTTTGGTTGGAGGGACTAAAGTGGGGTTAAACTTTAGTCCCTCTCAGGACTTATGTTTTTATGAGAGGGACTAAATTTAGTCCCTAGT
TTCCAAACACCCCCTAAAG
dot-bracket secondary structure
.....(((.(((((((((....((((((((((............((((((((((((((((((....))))...))))))))))))))))))))))))...
..))))))))).)))....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TACTAAGGTGGTGTTTGGTTGGAGGGACTAAAGTGGGGTTAAACTTTAGTCCCTCTCAGGACTTATGTTTTTATGAGAGGGACTAAATTTAGTCCCTAGT
TTCCAAACACCCCCTAAAG
dot-bracket secondary structure
.....(((.(((((((((....((((((((((............((((((((((((((((((....))))...))))))))))))))))))))))))...
..))))))))).)))....
SIMILARITIES| miRBase no hits PMRD osa-miRf10823-akr: 5e-25 microPC no hits | UniProt no hits RFAM MIR1122: 0.0000004 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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