ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR1120
source: miRNEST
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ACTACCTCCGTCCCAAAATTA miRNA* TTTGGGGACGGAGGGAGTAT mismatches: 3 bulges: 1 |
pre-miRNA
AACTTTTTACTACTACCTCCGTCCCAAAATTATAACAATTTTTAGCTATGAATCTGGACACACAGTTGTCTATTTTTATAGTTAAAAATGCTTATATTTG
GGGACGGAGGGAGTATTTCATGAC
dot-bracket secondary structure
..........((((.((((((((((..((.(((((..(((((((((((((((..((((((......))))))..)))))))))))))))..))))).)).
)))))))))).)))).........
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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AACTTTTTACTACTACCTCCGTCCCAAAATTATAACAATTTTTAGCTATGAATCTGGACACACAGTTGTCTATTTTTATAGTTAAAAATGCTTATATTTG
GGGACGGAGGGAGTATTTCATGAC
dot-bracket secondary structure
..........((((.((((((((((..((.(((((..(((((((((((((((..((((((......))))))..)))))))))))))))..))))).)).
)))))))))).)))).........
SIMILARITIES| miRBase osa-MIR1439: 0.0000000004 PMRD osa-miR1439: 0.0000000004 microPC miR1439: 0.00002 | UniProt no hits RFAM MIR1122: 2e-46 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
