ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR827
source: miRNEST
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTAGATGACCATCAGCAAACA miRNA* TTTTGTTGCTGGTCATCTAGCT mismatches: 1 bulges: 1 |
pre-miRNA
ATTATTGCTAGCCATGAACCTGTTTTGTTGCTGGTCATCTAGCTACCCGTGCATGCCTGGAGATTGGAGAATAATCGTGACGATGCAGCAGTCGGCTTCT
TGGCTGTTGGGCACGCGTGGTTAGATGACCATCAGCAAACAAGTTCGTGGGACGCATGCA
dot-bracket secondary structure
.....(((...((((((((.(((((.((((.(((((((((((((((.(((((..(((.((((.((((......((((...)))).......)))).))))
.)))......))))).))))))))))))))).))))))))).))))))))...)))....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
Source sequences
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deep sequencing data evidence
ATTATTGCTAGCCATGAACCTGTTTTGTTGCTGGTCATCTAGCTACCCGTGCATGCCTGGAGATTGGAGAATAATCGTGACGATGCAGCAGTCGGCTTCT
TGGCTGTTGGGCACGCGTGGTTAGATGACCATCAGCAAACAAGTTCGTGGGACGCATGCA
dot-bracket secondary structure
.....(((...((((((((.(((((.((((.(((((((((((((((.(((((..(((.((((.((((......((((...)))).......)))).))))
.)))......))))).))))))))))))))).))))))))).))))))))...)))....
SIMILARITIES| miRBase osa-MIR827b: 4e-63 PMRD osa-miR827b: 4e-63 microPC miR827: 0.000008 | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
Source sequences
download this record
deep sequencing data evidence
