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ABOUT THIS RECORD
ID:
MNEST004752
species:
Oryza sativa
miRNA family:
MIRf1522
source:
miRNEST
Taxonomy by NCBI:
Oryza sativa
Oryza
Oryzeae
Ehrhartoideae
BEP clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
GCACGCGTGGTTAGATGACCA
miRNA*
GTCATCTAGCTACCCGTGCAT
mismatches:
1
bulges:
0
View larger
pre-miRNA
TTATTGCTAGCCATGAACCTGTTTTGTTGCTG
GTCATCTAGCTACCCGTGCAT
GCCTGGAGATTGGAGAATAATCGTGACGATGCAGCAGTCGGCTTCTT
GGCTGTTGG
GCACGCGTGGTTAGATGACCA
TCAGCAAACAAGTTCGTGGGACGCATGCA
dot-bracket secondary structure
....(((...((((((((.(((((.((((.((
(((((((((((((.(((((..
(((.((((.((((......((((...)))).......)))).)))).
)))......
))))).)))))))))))))))
.))))))))).))))))))...)))....
SIMILARITIES
miRBase
osa-MIR827b
:
4e-63
PMRD
osa-miR827b
:
4e-63
microPC
miR827
:
0.000008
UniProt
no hits
RFAM
no hits
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
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