ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIRf1372
source: miRNEST
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GCGAGCTTCTCGAAGATGTCG miRNA* GCGTGCTTGGNCGAGCTCGCCG mismatches: 3 bulges: 1 |
pre-miRNA
CCCTCGGAGACGGCGTGCTTGGNCGAGCTCGCCGGGGAGGACGAGGCGGACGGAGGTCTGGATCTCGCGGGAGGTGANTGGTGGGCTTCTTGTTGTAGCG
GGCGAGCTTGGCGGACTCCCCGGCGAGCTTCTCGAAGATGTCGTTGATGAAG
dot-bracket secondary structure
...(((..((((((((..((((..(((((((((((((((..((((((((((....)))))..)))))((((((((.........))))))))(((((((.
.....)))..)))).))))))))))))))).))))..))))))))..)))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
Source sequences
download this record
CCCTCGGAGACGGCGTGCTTGGNCGAGCTCGCCGGGGAGGACGAGGCGGACGGAGGTCTGGATCTCGCGGGAGGTGANTGGTGGGCTTCTTGTTGTAGCG
GGCGAGCTTGGCGGACTCCCCGGCGAGCTTCTCGAAGATGTCGTTGATGAAG
dot-bracket secondary structure
...(((..((((((((..((((..(((((((((((((((..((((((((((....)))))..)))))((((((((.........))))))))(((((((.
.....)))..)))).))))))))))))))).))))..))))))))..)))..
SIMILARITIES| miRBase no hits PMRD osa-miRf10132-akr: 3e-70 microPC no hits | UniProt sp|Q7GBK0|H2B7_ORYSJ: 0.00000003 RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
Source sequences
download this record
