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ABOUT THIS RECORD
ID:
MNEST004756
species:
Oryza sativa
miRNA family:
MIRf1372
source:
miRNEST
Taxonomy by NCBI:
Oryza sativa
Oryza
Oryzeae
Ehrhartoideae
BEP clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
GCGAGCTTCTCGAAGATGTCG
miRNA*
GCGTGCTTGGCGAGCTCGCCG
mismatches:
3
bulges:
0
View larger
pre-miRNA
CCCTCGGAGACG
GCGTGCTTGGCGAGCTCGCCG
GGGAGGACAAGGCGGACGGAGGTCTGGATCTCGCGGGAGGTGATGGTGGGCTTCTTGTTGTAACGGG
CGAGCTTGGCGGACTCCCCG
GCGAGCTTCTCGAAGATGTCG
TTGATGAAG
dot-bracket secondary structure
...(((..((((
((((..((((.((((((((((
(((((....((((.(((((((((((..(((((((.....)))).)))))))))).))))((.....)
)..))))......)))))))
)))))))).))))..))))))
))..)))..
SIMILARITIES
miRBase
no hits
PMRD
osa-miRf10132-akr
:
7e-74
microPC
no hits
UniProt
sp|Q7GBK0|H2B7_ORYSJ: 3e-20
RFAM
no hits
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
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