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ABOUT THIS RECORD
ID:
MNEST004760
species:
Oryza sativa
miRNA family:
MIRf38
source:
miRNEST
Taxonomy by NCBI:
Oryza sativa
Oryza
Oryzeae
Ehrhartoideae
BEP clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
GACGAGTGGTCAAACAGTGCA
miRNA*
CACTGTTTGACTATTCGTCTT
mismatches:
0
bulges:
0
View larger
pre-miRNA
TTTTGGTACTTCCTCCGCTCCCCCTAATATAAGAGATTTTGGCATTTGCTTG
CACTGTTTGACTATTCGTCTT
ATTAAAAAATTTAGAATTATTATTTAT
TTTATTTGTGACTTACTTTATTATCCAAAGTACTTTAAGCACAACTTTTTGTTTTTTATATTTACACAAATTTTTTGAATAA
GACGAGTGGTCAAACAGT
GCA
AGCAAAATGTCAAAATCCGTTATATTTGGGGACGGAGGGAGTAGTTGGT
dot-bracket secondary structure
......(((((((((((.(((((..(((((((..((((((((((((((((((
(((((((((((((((((((((
((((((((((((..((.(((.......
.....(((((.((((((((.......)))))).....))))))).............))).))....))))))))).)))))
))))))))))))))))))
)))
))).)))))))))))))..))))))).))))))))))))))))......
SIMILARITIES
miRBase
osa-MIR818e
:
9e-16
PMRD
osa-miR818e
:
9e-16
microPC
miR1439
:
0.0008
UniProt
no hits
RFAM
MIR806: 1e-24
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
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