ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIRf34
source: miRNEST
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTACATTGTGAAACGGATGGA miRNA* CCTCCGTTTCACAATGTAGAC mismatches: 2 bulges: 0 |
pre-miRNA
CTTTACCATACTTCCTCCGTTTCACAATGTAGACTTTCTACGTATCGCCCGCATTCATATAGATATTAATGAATCTAGATTCATATGTGTGTGTAGATTC
ATTAACGTCTATATGAATATGGACAACGCTATAAAGTCTTACATTGTGAAACGGATGGAGTACTTTGTT
dot-bracket secondary structure
........((((((.((((((((((((((((((((((.(((((.....(((.((((((((((((.((((((((((((.((.((....)).)).)))))))
))))).)))))))))))).)))...))).)).)))))).)))))))))))))))).)))))).......
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CTTTACCATACTTCCTCCGTTTCACAATGTAGACTTTCTACGTATCGCCCGCATTCATATAGATATTAATGAATCTAGATTCATATGTGTGTGTAGATTC
ATTAACGTCTATATGAATATGGACAACGCTATAAAGTCTTACATTGTGAAACGGATGGAGTACTTTGTT
dot-bracket secondary structure
........((((((.((((((((((((((((((((((.(((((.....(((.((((((((((((.((((((((((((.((.((....)).)).)))))))
))))).)))))))))))).)))...))).)).)))))).)))))))))))))))).)))))).......
SIMILARITIES| miRBase osa-MIR819k: 3e-24 PMRD osa-miR819k: 3e-24 microPC miR1132: 6e-16 | UniProt no hits RFAM MIR1122: 2e-34 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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