ABOUT THIS RECORDspecies: Gallus gallus
miRNA family: miR-1797
source: miRNEST
Taxonomy by NCBI:
Gallus gallus Gallus Phasianinae Phasianidae Galliformes Neognathae Aves Coelurosauria Theropoda Saurischia Dinosauria Archosauria Sauria Sauropsida Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GGTTGGAACTGAGCAGGAACT miRNA* TGCCTTTTTAGTATCTGGACCTC mismatches: 2 bulges: 2 |
pre-miRNA
ATTCGGCACGAGGTTGGAACTGAGCAGGAACTGCACAGCTGTGGTTTCCATGGCCTGCCAGCATGCCATGCATCTTACAGGAAAGCATCTCATACTTTCT
GTACATTGCTTGGATACGTACCAGTGCCTTTTTAGTATCTGGACCTCTGAATTTT
dot-bracket secondary structure
.........(((((((((((((((.(((.((((((..(((((((...))))))).)))..((.(((((.(((...((((((((............)))))
)))...))).))).)).))...))).))).)))))).))).))))))........
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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ATTCGGCACGAGGTTGGAACTGAGCAGGAACTGCACAGCTGTGGTTTCCATGGCCTGCCAGCATGCCATGCATCTTACAGGAAAGCATCTCATACTTTCT
GTACATTGCTTGGATACGTACCAGTGCCTTTTTAGTATCTGGACCTCTGAATTTT
dot-bracket secondary structure
.........(((((((((((((((.(((.((((((..(((((((...))))))).)))..((.(((((.(((...((((((((............)))))
)))...))).))).)).))...))).))).)))))).))).))))))........
SIMILARITIES| miRBase gga-mir-1797: 9e-18 PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
