ABOUT THIS RECORDspecies: Gallus gallus
miRNA family: miR-3540
source: miRNEST
Taxonomy by NCBI:
Gallus gallus Gallus Phasianinae Phasianidae Galliformes Neognathae Aves Coelurosauria Theropoda Saurischia Dinosauria Archosauria Sauria Sauropsida Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATGGTGGAAGAACAAGGCCTGC miRNA* AGGGCCTGCTTCCTCCACCTACA mismatches: 5 bulges: 1 |
pre-miRNA
TCCAAAAGGAAATGGTGGAAGAACAAGGCCTGCCCGCGAGGTAAGGGCAGGGCCTGCTTCCTCCACCTACAGGGCTCTC
dot-bracket secondary structure
(((....)))...((((((.(((..((((((((((.........))))).)))))..))).))))))............
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TCCAAAAGGAAATGGTGGAAGAACAAGGCCTGCCCGCGAGGTAAGGGCAGGGCCTGCTTCCTCCACCTACAGGGCTCTC
dot-bracket secondary structure
(((....)))...((((((.(((..((((((((((.........))))).)))))..))).))))))............
SIMILARITIES| miRBase gga-mir-3540: 2e-29 PMRD no hits microPC no hits | UniProt no hits RFAM SCARNA15: 6e-33 | most similar mature miRNAs |
Identical with: gga-mir-3540 from miRBase (MNEST026374) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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