ABOUT THIS RECORDspecies: Caenorhabditis elegans
miRNA family: miR-4121
source: miRNEST
Taxonomy by NCBI:
Caenorhabditis elegans Caenorhabditis Peloderinae Rhabditidae Rhabditoidea Rhabditida Chromadorea Nematoda Pseudocoelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GAGTTGGAGTTGGGTTTGGTG miRNA* TTGAACCTGAGTATTTTTCTTCA mismatches: 4 bulges: 2 |
pre-miRNA
GAATATGATTGATGGTTCATTGGAGAGATTGGAGTTGGAGTTGGGTTTGGTGAGATTTCCTCTTTTGGACGGACTTCTTCTTGACGAGCTTTTTGGTCGA
GAACTCCGTGATAGGAAACATTTGATTGAACCTGAGTATTTTTCTTCAGTCTTTCCATCTCTGGATCATCAGCAAT
dot-bracket secondary structure
.....((.(((((((((((.((((((((((((((..(((.(((((((((((.(((((((((.((....(((((....((((((((..........)))))
))).))))))).)))))..)))).)))))))))))...)))..))))))))))))))....)))))))))))))..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GAATATGATTGATGGTTCATTGGAGAGATTGGAGTTGGAGTTGGGTTTGGTGAGATTTCCTCTTTTGGACGGACTTCTTCTTGACGAGCTTTTTGGTCGA
GAACTCCGTGATAGGAAACATTTGATTGAACCTGAGTATTTTTCTTCAGTCTTTCCATCTCTGGATCATCAGCAAT
dot-bracket secondary structure
.....((.(((((((((((.((((((((((((((..(((.(((((((((((.(((((((((.((....(((((....((((((((..........)))))
))).))))))).)))))..)))).)))))))))))...)))..))))))))))))))....)))))))))))))..
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt sp|P34416|LASP1_CAEEL: 8e-16 RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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