miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Back to search results



ABOUT THIS RECORD

ID: MNEST006961
species: Physcomitrella patens
miRNA family: MIR1023
source: miRNEST

Taxonomy by NCBI:
Physcomitrella patens Physcomitrella Funariaceae Funariales Funariidae Bryopsida Moss Superclass V Bryophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
ACACTCTCTCCATTTCTCTAC

miRNA*
GGGGTGTGTAGGAGGAGGTGGCC

mismatches: 4
bulges: 2

View larger
pre-miRNA
AGTTTTGGTCGGATGTTGCGGTGGGGTGTGTAGGAGGAGGTGGCCTTGGGGGTTGACGAGGGAGCGATTGGACCACCTTGCAGTTTCATGGCACACTCTC
TCCATTTCTCTAC
CGTTCATGCAGCGGTTGAT


dot-bracket secondary structure
.......(((((.(((.(((((((((...((.(((((.(((((((...(((((((.(((((..............))))))))))))..))).)))).))
)))))..))))))
)))....)))....)))))



SIMILARITIES
miRBase ppt-MIR1023a: 9e-36

PMRD no hits

microPC no hits
UniProt no hits

RFAM MIR1023: 7e-34
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
deep sequencing data evidence





Liczniki na strone;