ABOUT THIS RECORDspecies: Physcomitrella patens
miRNA family: MIR1062
source: miRNEST
Taxonomy by NCBI:
Physcomitrella patens Physcomitrella Funariaceae Funariales Funariidae Bryopsida Moss Superclass V Bryophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCCCTCACGTGGTGTTTGCAGC miRNA* TTGCAAACACCCGTATGGGACG mismatches: 2 bulges: 2 |
pre-miRNA
GGTTGTTGTCGTCCCTCACGTGGTGTTTGCAGCTAGGATGTCGGGAGGGGTCGATGTGTTGTGGAATGTTCCGCTCCTTGAAATTTGAGTGACCCTTACC
GTCTGCCAGTGAGGCCGCTTGCAAACACCCGTATGGGACGACGAAGCT
dot-bracket secondary structure
((((.((((((((((..(((.((((((((((((..(((...(((.((((((((...((..(((((....)))))....)).........)))))))).))
))))(((.....))).)).)))))))))))))..))))))))))))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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deep sequencing data evidence
GGTTGTTGTCGTCCCTCACGTGGTGTTTGCAGCTAGGATGTCGGGAGGGGTCGATGTGTTGTGGAATGTTCCGCTCCTTGAAATTTGAGTGACCCTTACC
GTCTGCCAGTGAGGCCGCTTGCAAACACCCGTATGGGACGACGAAGCT
dot-bracket secondary structure
((((.((((((((((..(((.((((((((((((..(((...(((.((((((((...((..(((((....)))))....)).........)))))))).))
))))(((.....))).)).)))))))))))))..))))))))))))))
SIMILARITIES| miRBase ppt-MIR1062: 2e-80 PMRD ppt-miR1062: 2e-80 microPC miR1062: 6e-68 | UniProt no hits RFAM no hits | most similar mature miRNAs |
Identical with: ppt-MIR1062 from miRBase (MNEST039653) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
deep sequencing data evidence
