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ABOUT THIS RECORD

ID: MNEST006976
species: Physcomitrella patens
miRNA family: MIR1171
source: miRNEST

Taxonomy by NCBI:
Physcomitrella patens Physcomitrella Funariaceae Funariales Funariidae Bryopsida Moss Superclass V Bryophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
GGGAGTGGAGTGGAGTGGAGT

miRNA*
GCCTTTTTATTCTGCCTCTT

mismatches: 4
bulges: 1

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pre-miRNA
AGGCCTTGTTACTGTCGAAGCCTTCGAATAGGCGCCTTTTTATTCTGCCTCTTATCGGTTGCTTTCTTTCAAACAGGCCGCCCGGTTTGTTTGTGCATCT
GGCGTCGGTGATAGGATCAGGCCGGTGAAGTGTGCACGAAGTGTCTGTGAAAGAGACTTTGCGGGAGTGGAGTGGAGTGGAGTGAAGCCGGGGAGGCGTT
CGGCGTTCGCGGC


dot-bracket secondary structure
..(((.((..((.((((((((((((.....(((.((.((((((((((((((.((..((((.(((((...((.(((((((....))))..(((((((((((
..((((((((((...)))..))))))).)).))))))))).))).)).))))).)))).)).))).))))))))))).))......)))..)))))).))
)))))).)).)))



SIMILARITIES
miRBase cre-MIR1171: 0.00004

PMRD cre-miR1171: 0.00004

microPC no hits
UniProt no hits

RFAM no hits
most similar mature miRNAs

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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