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ABOUT THIS RECORD
ID:
MNEST006977
species:
Physcomitrella patens
miRNA family:
MIR319
source:
miRNEST
Taxonomy by NCBI:
Physcomitrella patens
Physcomitrella
Funariaceae
Funariales
Funariidae
Bryopsida
Moss Superclass V
Bryophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TTGGACTGAAGGGAGCTCCAC
miRNA*
GGAGCTCCGTTTTCGGTCCAATA
mismatches:
0
bulges:
2
View larger
pre-miRNA
ACCTTGATTGT
GGAGCTCCGTTTTCGGTCCAATA
GTGGCTGCGACGGAAGGTGGTCCCGCTGCCGAATCACACGTCCGGGTTCTTTATCGGGGGCAGGGC
CCCGATACGGTATCCGAACGTTTGTCCCGGGAACTGGTCGACCTTCCGCCCGGCGTCTC
TTGGACTGAAGGGAGCTCCAC
TCTTGGCG
dot-bracket secondary structure
.((..((..((
((((((((..(((((((((((.(
(..((((...(((((((((((((((.........((.((((.(((((.((.((((((((......)
))))))).)).))))).)))).))...)))).))).....))))))))..))))..)).
)))))))))))))))))))))
))..))..
SIMILARITIES
miRBase
ppt-MIR319a
:
1e-79
PMRD
ppt-miR319a
:
1e-79
microPC
miR319
:
0.0001
UniProt
no hits
RFAM
MIR159: 0.0002
most similar mature miRNAs
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
degradome data
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