ABOUT THIS RECORDspecies: Pimephales promelas
miRNA family: miR-199a
source: miRNEST
Taxonomy by NCBI:
Pimephales promelas Pimephales Cyprinidae Cyprinoidea Cypriniformes Cypriniphysi Otophysi Ostariophysi Otocephala Clupeocephala Elopocephala Teleostei Neopterygii Actinopteri Actinopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CAGTAGTCCGCACATTGGTTA miRNA* CCCAGTGTTCAGACTACCTGTT mismatches: 4 bulges: 1 |
pre-miRNA
TTTTGCCTCCCCCCCGCCTGCCCAGTGTTCAGACTACCTGTTCATCATGCTGCAGCTGAACAGTAGTCCGCACATTGGTTAGGCTGGGCAGGGACACA
dot-bracket secondary structure
.......(((((((.(((((.(((((((...((((((.((((((....((....))))))))))))))...))))))).))))).)))..))))....
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TTTTGCCTCCCCCCCGCCTGCCCAGTGTTCAGACTACCTGTTCATCATGCTGCAGCTGAACAGTAGTCCGCACATTGGTTAGGCTGGGCAGGGACACA
dot-bracket secondary structure
.......(((((((.(((((.(((((((...((((((.((((((....((....))))))))))))))...))))))).))))).)))..))))....
SIMILARITIES| miRBase dre-mir-199-3: 2e-39 PMRD no hits microPC no hits | UniProt no hits RFAM mir-199: 3e-38 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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