ABOUT THIS RECORDspecies: Litopenaeus vannamei
miRNA family: mir-1306
source: miRNEST
Taxonomy by NCBI:
Litopenaeus vannamei Litopenaeus Penaeidae Penaeoidea Dendrobranchiata Decapoda Eucarida Eumalacostraca Malacostraca Crustacea Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ACGTTGGCTCTGGTGTAGGAA miRNA* CACCTGCTGCTGAAGCCAAGAAGG mismatches: 5 bulges: 1 |
pre-miRNA
TTGCCAACGTTGGCTCTGGTGTAGGAACTGGTGGTGGTGGCGGTGGTGCTGCCCCTGCAGCTGCTGCAGCTGCCAGTGCACCTGCTGCTGAAGCCAAGAA
GGAAG
dot-bracket secondary structure
.........((((((.(((((((((.(((((((((....(((((...(((((....))))).))))).)))))))))...))))).)))).))))))...
.....
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
TTGCCAACGTTGGCTCTGGTGTAGGAACTGGTGGTGGTGGCGGTGGTGCTGCCCCTGCAGCTGCTGCAGCTGCCAGTGCACCTGCTGCTGAAGCCAAGAA
GGAAG
dot-bracket secondary structure
.........((((((.(((((((((.(((((((((....(((((...(((((....))))).))))).)))))))))...))))).)))).))))))...
.....
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
