ABOUT THIS RECORDspecies: Litopenaeus vannamei
miRNA family: mir-645
source: miRNEST
Taxonomy by NCBI:
Litopenaeus vannamei Litopenaeus Penaeidae Penaeoidea Dendrobranchiata Decapoda Eucarida Eumalacostraca Malacostraca Crustacea Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GCAAGGCTGGTACTGCTGATC miRNA* AAAGCAGTACTAAGTCTGCCA mismatches: 4 bulges: 2 |
pre-miRNA
TGCGGGTAAGTTTTAAACGTCTCAAAGCAGTACTAAGTCTGCCATGGGGACCTGGCTTGTCTCTCGCCCCCTCCCTACTAGGGGCAAGGCTGGTACTGCT
GATCCTGACTGCAGCACAGGGGCT
dot-bracket secondary structure
...(((...(((...)))..)))..((((((((((.(((((((.((((((...(((.........)))...)))))).....))).))))))))))))))
..(((((.........)))))...
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TGCGGGTAAGTTTTAAACGTCTCAAAGCAGTACTAAGTCTGCCATGGGGACCTGGCTTGTCTCTCGCCCCCTCCCTACTAGGGGCAAGGCTGGTACTGCT
GATCCTGACTGCAGCACAGGGGCT
dot-bracket secondary structure
...(((...(((...)))..)))..((((((((((.(((((((.((((((...(((.........)))...)))))).....))).))))))))))))))
..(((((.........)))))...
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
