miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Back to search results



ABOUT THIS RECORD

ID: MNEST008295
species: Vitis vinifera
miRNA family: MIR319
source: miRNEST

Taxonomy by NCBI:
Vitis vinifera Vitis Vitaceae Vitales rosids incertae sedis rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TTGGACTGAAGGGAGCTCC

miRNA*
GGTTCCTTTGCAGCCCAAAA

mismatches: 1
bulges: 1

View larger
pre-miRNA
TGTCAAGAAAACTGCAGAAATGGGGGTTCCTTTGCAGCCCAAAACAACTCCATCGCTGAAGAAGATGATGAACTTCATGCTCCTTGTTTTGGACTGAAGG
GAGCTCC
TAGTTCTTCTCTTTTCCTTCT


dot-bracket secondary structure
......(((((....((((.(((((((((((((.(((.(((((((((.......(((((((...........))))).))...))))))))).)))))))
)))))))
)).))))....))))).....



SIMILARITIES
miRBase vvi-MIR319e: 5e-56

PMRD vvi-miR319e: 5e-56

microPC miR319: 1e-41
UniProt no hits

RFAM no hits
most similar mature miRNAs

Identical with: vvi-MIR319e from miRBase (MNEST041637)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
degradome data
download this record
deep sequencing data evidence





Liczniki na strone;