ABOUT THIS RECORDspecies: Vitis vinifera
miRNA family: miR3633a
source: miRNEST
Taxonomy by NCBI:
Vitis vinifera Vitis Vitaceae Vitales rosids incertae sedis rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GGAATGGATGGTTAGGAGAG miRNA* TTCCTATACCACCCATTCCCT mismatches: 3 bulges: 1 |
pre-miRNA
CTGCAGGTTTGAAATGGGAGATGAATATTTCGAAAGCAATAGGAATGGATGGTTAGGAGAGAACTCCTCTTATATATTTCTTCATCTTCTCCGCCGGAGA
TGTGGAAGTGCAGTTGGTTCCTATACCACCCATTCCCTACGGTTTTCGAAATTTTCTCCCTTTTCTCTTGGTGCTC
dot-bracket secondary structure
...((((...((((.((((((.....(((((((((((....(((((((.((((((((((..((((.........(((((((.(((((((......)))))
)).))))))).))))..)))))).)))).))))))).....)))))))))))..)))))).)))).))))......
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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deep sequencing data evidence
CTGCAGGTTTGAAATGGGAGATGAATATTTCGAAAGCAATAGGAATGGATGGTTAGGAGAGAACTCCTCTTATATATTTCTTCATCTTCTCCGCCGGAGA
TGTGGAAGTGCAGTTGGTTCCTATACCACCCATTCCCTACGGTTTTCGAAATTTTCTCCCTTTTCTCTTGGTGCTC
dot-bracket secondary structure
...((((...((((.((((((.....(((((((((((....(((((((.((((((((((..((((.........(((((((.(((((((......)))))
)).))))))).))))..)))))).)))).))))))).....)))))))))))..)))))).)))).))))......
SIMILARITIES| miRBase vvi-MIR3633a: 2e-84 PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
Identical with: vvi-MIR3633a from miRBase (MNEST041715) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
deep sequencing data evidence
