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ABOUT THIS RECORD

ID: MNEST008310
species: Vitis vinifera
miRNA family: MIR160
source: miRNEST

Taxonomy by NCBI:
Vitis vinifera Vitis Vitaceae Vitales rosids incertae sedis rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
GCCTGGCTCCCTGAATGCCAT

miRNA*
GGCATGAGGGGAGTCAAGCAG

mismatches: 4
bulges: 0

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pre-miRNA
TTCGTCTCGGAATATTGTTCTGCCTGGCTCCCTGAATGCCATCTAAGAAGCTTGTTAAAGAGTGTTGACAACCTTCCTATTTGGCATGAGGGGAGTCAAG
CAG
GCGAAACACATGGTGATC


dot-bracket secondary structure
((((((..(((((...)))))((.(((((((((..((((((..((.((((.(((((((......))))))).)))).))..))))))..))))))))).)
).)
))))).(((...)))...



SIMILARITIES
miRBase vvi-MIR160b: 4e-53

PMRD vvi-miR160e: 4e-53

microPC no hits
UniProt no hits

RFAM mir-160: 0.0000000001
most similar mature miRNAs

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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