miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Back to search results



ABOUT THIS RECORD

ID: MNEST008312
species: Vitis vinifera
miRNA family: MIR168
source: miRNEST

Taxonomy by NCBI:
Vitis vinifera Vitis Vitaceae Vitales rosids incertae sedis rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCGCTTGGTGCAGGTCGGGAA

miRNA*
CCCGCCTTGCATCAACTGAAT

mismatches: 3
bulges: 0

View larger
pre-miRNA
ACGGTGGTCTCTAATTCGCTTGGTGCAGGTCGGGAACCGACTTCGCCGCTCCGGCAGCGCCGGAGGCACGCGGCGGCCTACGATTGGTTGCTGAGCGAAT
TCCGATCCCGCCTTGCATCAACTGAATCGGAGACGGCGG


dot-bracket secondary structure
...((.((((((.(((((.((((((((((.(((((...((.(((((.((((((((...)))))).))...((((((((.......)))))))).))))).
))...))))).)))))))))).))))).)))))).))..



SIMILARITIES
miRBase vvi-MIR168: 6e-71

PMRD vvi-miR168: 6e-71

microPC miR168: 8e-58
UniProt no hits

RFAM MIR168: 7e-74
most similar mature miRNAs

Identical with: vvi-MIR168 from miRBase (MNEST041596)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
deep sequencing data evidence





Liczniki na strone;