ABOUT THIS RECORDspecies: Vitis vinifera
miRNA family: MIRf838
source: miRNEST
Taxonomy by NCBI:
Vitis vinifera Vitis Vitaceae Vitales rosids incertae sedis rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTAGGGTTCCGTCCATTTCCC miRNA* GAGTTGAACGCCAACCCTAGCT mismatches: 4 bulges: 1 |
pre-miRNA
CTTCTTCGTTAACGTGGTCTTTGGAGTTGAACGCCAACCCTAGCTCTCGCCGTCTCTCTTTCCCTCGCCGCCGTTAGGGTTCCGTCCATTTCCCCCTATT
TTCTCGACTATTTT
dot-bracket secondary structure
.....(((..((.((((.....((((.((.(((..(((((((((....((.((.............)).)).))))))))).))).)).))))..)))).
))..))).......
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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CTTCTTCGTTAACGTGGTCTTTGGAGTTGAACGCCAACCCTAGCTCTCGCCGTCTCTCTTTCCCTCGCCGCCGTTAGGGTTCCGTCCATTTCCCCCTATT
TTCTCGACTATTTT
dot-bracket secondary structure
.....(((..((.((((.....((((.((.(((..(((((((((....((.((.............)).)).))))))))).))).)).))))..)))).
))..))).......
SIMILARITIES| miRBase no hits PMRD osa-miRf12086-akr: 0.00002 microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
