ABOUT THIS RECORDspecies: Vitis vinifera
miRNA family: MIRf564
source: miRNEST
Taxonomy by NCBI:
Vitis vinifera Vitis Vitaceae Vitales rosids incertae sedis rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CAGCATCATCAAGATTCCCAC miRNA* GAATCTTGATGATGCTCCA mismatches: 1 bulges: 2 |
pre-miRNA
TTATTGCCGCTGCAGCATCATCAAGATTCCCACATCAAAGAGCCATCGGAGTGTAGGAAGGGACCACAAAAGTCACCATCACCACCACGCACTGAGTCTC
AATACTTGTGAATCTTGATGATGCTCCATCCGCAAAC
dot-bracket secondary structure
...((((...((.((((((((((((((((..(((.....(((...((((.((((..((.(((((.......))).)).))......)))).))))..)))
......))))))))))))))))))).))...))))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
degradome data
download this record
TTATTGCCGCTGCAGCATCATCAAGATTCCCACATCAAAGAGCCATCGGAGTGTAGGAAGGGACCACAAAAGTCACCATCACCACCACGCACTGAGTCTC
AATACTTGTGAATCTTGATGATGCTCCATCCGCAAAC
dot-bracket secondary structure
...((((...((.((((((((((((((((..(((.....(((...((((.((((..((.(((((.......))).)).))......)))).))))..)))
......))))))))))))))))))).))...))))..
SIMILARITIES| miRBase vvi-MIR172c: 6e-74 PMRD vvi-miR172c: 6e-74 microPC miR172: 0.000002 | UniProt no hits RFAM mir-172: 1e-72 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
degradome data
download this record
