ABOUT THIS RECORDspecies: Vitis vinifera
miRNA family: MIR172
source: miRNEST
Taxonomy by NCBI:
Vitis vinifera Vitis Vitaceae Vitales rosids incertae sedis rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GAATCTTGATGATGCTCCATC miRNA* TGCAGCATCATCAAGATTCCC mismatches: 3 bulges: 0 |
pre-miRNA
TATTGCCGCTGCAGCATCATCAAGATTCCCACATCAAAGAGCCATCGGAGTGTAGGAAGGGACCACAAAAGTCACCATCACCACCACGCACTGAGTCTCA
ATACTTGTGAATCTTGATGATGCTCCATCCGCAAA
dot-bracket secondary structure
..((((...((.((((((((((((((((..(((.....(((...((((.((((..((.(((((.......))).)).))......)))).))))..))).
.....))))))))))))))))))).))...)))).
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
degradome data
download this record
TATTGCCGCTGCAGCATCATCAAGATTCCCACATCAAAGAGCCATCGGAGTGTAGGAAGGGACCACAAAAGTCACCATCACCACCACGCACTGAGTCTCA
ATACTTGTGAATCTTGATGATGCTCCATCCGCAAA
dot-bracket secondary structure
..((((...((.((((((((((((((((..(((.....(((...((((.((((..((.(((((.......))).)).))......)))).))))..))).
.....))))))))))))))))))).))...)))).
SIMILARITIES| miRBase vvi-MIR172c: 1e-72 PMRD vvi-miR172c: 1e-72 microPC miR172: 0.000002 | UniProt no hits RFAM mir-172: 2e-71 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
degradome data
download this record
