ABOUT THIS RECORDspecies: Vitis vinifera
miRNA family: miR396a
source: miRNEST
Taxonomy by NCBI:
Vitis vinifera Vitis Vitaceae Vitales rosids incertae sedis rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GTTCAAGAAAGCTGTGGGAAA miRNA* TTCCACAGCTTTCTTGAACTT mismatches: 0 bulges: 0 |
pre-miRNA
TCTCTGCAAGTCCTGCCATGCTTTTCCACAGCTTTCTTGAACTTCTTCTCCCTGTTTGGTGGTCTCCTACGTTTACCCATCCACTGAAGTTCAAGAAAGC
TGTGGGAAACCATGGCTTTTCAGGACTTC
dot-bracket secondary structure
.......(((((((((((((.((((((((((((((((((((((((........((.((..((...))..))...)).........)))))))))))))))
))))))))).)))))).....))))))).
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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deep sequencing data evidence
TCTCTGCAAGTCCTGCCATGCTTTTCCACAGCTTTCTTGAACTTCTTCTCCCTGTTTGGTGGTCTCCTACGTTTACCCATCCACTGAAGTTCAAGAAAGC
TGTGGGAAACCATGGCTTTTCAGGACTTC
dot-bracket secondary structure
.......(((((((((((((.((((((((((((((((((((((((........((.((..((...))..))...)).........)))))))))))))))
))))))))).)))))).....))))))).
SIMILARITIES| miRBase vvi-MIR396b: 1e-56 PMRD vvi-miR396b: 1e-56 microPC miR396: 0.0000001 | UniProt no hits RFAM MIR396: 1e-53 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
deep sequencing data evidence
