miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Back to search results



ABOUT THIS RECORD

ID: MNEST008327
species: Vitis vinifera
miRNA family: miR162
source: miRNEST

Taxonomy by NCBI:
Vitis vinifera Vitis Vitaceae Vitales rosids incertae sedis rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGGATGCAGCGGTTCATCGAT

miRNA*
CGATAAACCTCTGCATCCAGC

mismatches: 2
bulges: 0

View larger
pre-miRNA
TTTGAAGTCACTGGATGCAGCGGTTCATCGATCTCTTCCTGAAATTGTTGTGAAAAAAGCAGATCAAGAATCGGTCGATAAACCTCTGCATCCAGCGTTC
ACTC


dot-bracket secondary structure
..((((....((((((((((.((((.(((((((..(((.(((..(((((........))))).))).)))..))))))).)))).))))))))))..)))
)...



SIMILARITIES
miRBase vvi-MIR162: 4e-53

PMRD vvi-miR162: 4e-53

microPC miR162: 5e-43
UniProt no hits

RFAM MIR162_2: 1e-43
most similar mature miRNAs

Identical with: miR162 from microPC (MNEST046792)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
degradome data
download this record





Liczniki na strone;