ABOUT THIS RECORDspecies: Vitis vinifera
miRNA family: MIRf519
source: miRNEST
Taxonomy by NCBI:
Vitis vinifera Vitis Vitaceae Vitales rosids incertae sedis rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GCATAGCATCATGAGCAATCA miRNA* ACTGCTCATGATATTATATCAT mismatches: 3 bulges: 1 |
pre-miRNA
CAATCAAGAATGCATAGCATCATGAGCAATCAGCCTTAGATTTTAGCAGAGTGACTGCTCATGATATTATATCATTTCAATTA
dot-bracket secondary structure
.......(((((.((((.((((((((((.(((..(((...........)))))).)))))))))).))))..)))))......
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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CAATCAAGAATGCATAGCATCATGAGCAATCAGCCTTAGATTTTAGCAGAGTGACTGCTCATGATATTATATCATTTCAATTA
dot-bracket secondary structure
.......(((((.((((.((((((((((.(((..(((...........)))))).)))))))))).))))..)))))......
SIMILARITIES| miRBase no hits PMRD ath-miRf11142-akr: 0.000001 microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
