ABOUT THIS RECORDspecies: Medicago truncatula
miRNA family: miR4249
source: miRNEST
Taxonomy by NCBI:
Medicago truncatula Medicago Trifolieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAATTTGAGAAGTTGAGATA miRNA* GATCAAACCTCGAGCTTATA mismatches: 5 bulges: 1 |
pre-miRNA
CGCATGCCTGTGGATCAAACCTCGAGCTTATAATTGAATTTGAGAAGTTGAGATACTTGTAATA
dot-bracket secondary structure
....(((..(((..((((..((((((.(((....))).))))))...))))..)))..)))...
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CGCATGCCTGTGGATCAAACCTCGAGCTTATAATTGAATTTGAGAAGTTGAGATACTTGTAATA
dot-bracket secondary structure
....(((..(((..((((..((((((.(((....))).))))))...))))..)))..)))...
SIMILARITIES| miRBase aly-MIR4249: 0.0007 PMRD no hits microPC no hits | UniProt sp|Q949Q1|GAUTB_ARATH: 0.0002 RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
