miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Back to search results



ABOUT THIS RECORD

ID: MNEST008394
species: Medicago truncatula
miRNA family: MIRf341
source: miRNEST

Taxonomy by NCBI:
Medicago truncatula Medicago Trifolieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
ATACTCCCTCCGTCCCAGTTT

miRNA*
TATAGGATGGAGGGAGTATAT

mismatches: 5
bulges: 0

View larger
pre-miRNA
AACACAAAATCATACTCCCTCCGTCCCAGTTTAACTGAGCCAATTTTCCATTTCACACAGATTAAGATAAGTGTATAAAGAAAAGAAAGAGAAAAATAGT
TTTGAGTGTCTTTGTCAAGTATTGGTGCATTCTTCTTTATGATAAATGTAAAGTAGAAATATTGAATTGAAAGTGGTGAAAGTAGTATTAATTAGAGTTA
TAATTGGAAAAAAAGTAATTAATGTTGTATTGAAAAGTGAAATGAGTCAAGATTCTTGGGACTATATTTTTTTACAAATGGCTCCGTTATTATAGGATGG
AGGGAGTATAT
CATACTGC


dot-bracket secondary structure
...........(((((((((((((((.....((((.((((((.(((((((((((((((.((((..((((.((((((.((.....((.(((((...((...
.....)).))))).)).....)).))))))(((.(((((((.....))))))).)))..)))).))))....)).)))))).((..(((......)))..
))..)))))))...((((..(((((.((.((((.((.(((......)))...)).)))).)).)))))...))))...)))))).)))).....))))))
)))))))))..
........



SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits
UniProt no hits

RFAM MIR1122: 0.00008
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record





Liczniki na strone;