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ABOUT THIS RECORD
ID:
MNEST008401
species:
Medicago truncatula
miRNA family:
MIRf341
source:
miRNEST
Taxonomy by NCBI:
Medicago truncatula
Medicago
Trifolieae
Papilionoideae
Fabaceae
Fabales
fabids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TACTCCCTCCGTCCCGAAATA
miRNA*
TNTTGGGAAGGAAAGGGGTAAT
mismatches:
4
bulges:
1
View larger
pre-miRNA
GAGAGTGNGTGTTTAGG
TNTTGGGAAGGAAAGGGGTAAT
CGAGTAATTCCAGATAAAGAAAAAAAAAGTGGAGGGCATCATTGTCCAGTGATAAGGCTGA
CAAAATAGATCAAAATGTATACAATATTTGTATTGTCTAAATGTGTACTTTTGAAAAAAATTGTAAGCTCAATCGAGTCTAAAAATATACTTTTAAAGGT
TTTCTTAGAAATGTGAACACAAATTATTATTGGAATATTTTCAGTCAAGTCTCATAAAACATCTATATG
TACTCCCTCCGTCCCGAAATA
TAAGCAAAAA
AAAC
dot-bracket secondary structure
.........((((((.(
(.((((((.(((..((((((..
((.(((..((((.................))))(((((....))))).((.((.(((((((
(((((((..((((((((((.((((((....)))))).))..(((((((((((((((...(((.((.((((....)))).))..)))....))))))))))
..((.((....)).)))))))...)))).))))..))))))..))).))))).))...))...))).))
)))))).))).)))))).)).
))))))....
....
SIMILARITIES
miRBase
osa-MIR1862a
:
0.00006
PMRD
osa-miRf10322-akr
:
0.0000003
microPC
miR1439
:
0.0002
UniProt
no hits
RFAM
MIR1122: 0.000005
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
Source sequences
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