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ABOUT THIS RECORD

ID: MNEST008456
species: Sorghum bicolor
miRNA family: MIR444
source: miRNEST

Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGCAGTTGCTGCCTCTAGCTT

miRNA*
GCTTGAGACAACAACTGCACA

mismatches: 3
bulges: 0

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pre-miRNA
TGGCAAAGGGAGGCAGCAAGCTTGAGACAACAACTGCACAACTTGCAAGAAAATTATCGGTATGGTTCAAAAACCAATTTTCTTGCAAGATATGCAGTTG
CTGCCTCTAGCTT
GTCACCACCCCTTGCATTA


dot-bracket secondary structure
..((((.(((.((..(((((((.(((.((.((((((((...(((((((((((((........(((((....))))))))))))))))))...))))))))
.)).))).)))))
))..)).))).))))....



SIMILARITIES
miRBase ssp-MIR444c: 3e-54

PMRD pvi-miR444: 3e-51

microPC miR444: 3e-54
UniProt sp|Q6EP49|MAD27_ORYSJ: 0.0003

RFAM MIR444: 4e-60
most similar mature miRNAs

Identical with: miR444 from microPC (MNEST045024)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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