miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

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ABOUT THIS RECORD

ID: MNEST008459
species: Sorghum bicolor
miRNA family: MIRf1365
source: miRNEST

Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
CGTTGGTGTTGAGCACGACGG

miRNA*
GTCGTGCCCGTCGCCGTCGCC

mismatches: 5
bulges: 0

View larger
pre-miRNA
TGCTCCTTCTTGCCGTCGCCGTTGGCCCACACGTTGGTGTTGAGCACGACGGGGTCGCCGCTGGAGTTGCCCATGAACTCCATGTCGATCTCGTCGTGCC
CGTCGCCGTCGCC
GGAGGTGAGGTAGAAGGAGGTGACGGTG


dot-bracket secondary structure
..((((((((.(((.(((((.(((((........(((((.((.((((((((((((((.((.(((((((.......))))))))).)))))))))))))).
)).)))))..)))
)).)))))))))))))))).........



SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits
UniProt sp|Q76BW5|XTH8_ORYSJ: 6e-18

RFAM no hits
most similar mature miRNAs

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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