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ABOUT THIS RECORD
ID:
MNEST008461
species:
Sorghum bicolor
miRNA family:
MIRf1396
source:
miRNEST
Taxonomy by NCBI:
Sorghum bicolor
Sorghum
Andropogoneae
Panicoideae
PACCAD clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
ATGGCCTCCTCGTGCTCCTCC
miRNA*
ACGAGGACGAGGAGGCCGCCT
mismatches:
4
bulges:
0
View larger
pre-miRNA
TCGACGACGAGG
ACGAGGACGAGGAGGCCGCCT
CCATCCACATCCATCCCGCCTCGCCTCAGCTGTCTCCGACCGCCCTCTGCCTACTTTTACTCCTACT
CCTCCCCGTCGGCGTCGTCGTACAACGGCTGGGCCGACCTCGCCGCGGCGCCCGACACCCCTTTCCCCTTCCCCTTCCCCCTCTCCCTCCCGCCGCAGCC
CACCACGC
ATGGCCTCCTCGTGCTCCTCC
CCACCGTCG
dot-bracket secondary structure
....(((((.((
(.(((.(((((((((((((..
.................)).(((.(((((((((...((((((((.......................
..........))))..))))....))))))))).))).......((((((...((................................)).)))))).((.
......))
..))))))))))).))).)))
....)))))
SIMILARITIES
miRBase
no hits
PMRD
no hits
microPC
no hits
UniProt
no hits
RFAM
no hits
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
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