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ABOUT THIS RECORD
ID:
MNEST008517
species:
Chlamydomonas reinhardtii
miRNA family:
miR1143
source:
miRNEST
Taxonomy by NCBI:
Chlamydomonas reinhardtii
Chlamydomonas
Chlamydomonadaceae
Chlamydomonadales
Chlorophyceae
Chlorophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
AGGACGTCCCCTTACGGGAAT
miRNA*
GCCCGAAGGGGACGTCCACT
mismatches:
4
bulges:
1
View larger
pre-miRNA
CACGAGGAAGG
AGGACGTCCCCTTACGGGAAT
ATAAATATTAGTGGCAGTGGTACAATAAATAAATTGTATGTAAACCCCTTCGGGCAACTAAAGTTTAT
CGCAGTATATAAATATCGGCAGTTGTGTGGCAACTGCTCCTAAAATTCATTT
GCCCGAAGGGGACGTCCACT
dot-bracket secondary structure
...........
.((((((((((((.((((...
((.(((.((((.((((((.(((((((......)))))))((((((...((.((....)).))))))))
.((..(((((((..........))))))))).)))))).)))).))).))..
.))))))))))))))))...
SIMILARITIES
miRBase
cre-MIR1143
:
3e-18
PMRD
cre-miR1143
:
3e-18
microPC
no hits
UniProt
no hits
RFAM
no hits
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
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