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ABOUT THIS RECORD
ID:
MNEST008520
species:
Chlamydomonas reinhardtii
miRNA family:
miR1143
source:
miRNEST
Taxonomy by NCBI:
Chlamydomonas reinhardtii
Chlamydomonas
Chlamydomonadaceae
Chlamydomonadales
Chlorophyceae
Chlorophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
AGGACGTCCCCTTACGGGAAT
miRNA*
ACCCGAAGGGGACGTCCTTC
mismatches:
3
bulges:
1
View larger
pre-miRNA
GTAAACTTAGCATGTTTACATACTCCGAAGG
AGGACGTCCCCTTACGGGAAT
ATAAATATTAGTGGCAGTGGTACCGCCACTGCCTAGTATATAAATATC
GGCAGTTGGCAGGCAACAATAAATAAATTTGTCCACTAAAATTTATTT
ACCCGAAGGGGACGTCCTTC
GGAGTATATAAATATAGGATTTTAATAC
dot-bracket secondary structure
.((((.((...(((((((.(((((((((...
(((((((((((((.((((...
((((((.((((((((((..((.(((((((((((..((((....)))).
))))).)))).))..))...........))).))))))).))))))..
.)))))))))))))))))))
))))))).)))))))..)).))))....
SIMILARITIES
miRBase
cre-MIR1143
:
2e-25
PMRD
cre-miR1143
:
2e-25
microPC
no hits
UniProt
sp|P37825|YCX5_CHLRE: 0.00008
RFAM
no hits
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
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