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ABOUT THIS RECORD

ID: MNEST008520
species: Chlamydomonas reinhardtii
miRNA family: miR1143
source: miRNEST

Taxonomy by NCBI:
Chlamydomonas reinhardtii Chlamydomonas Chlamydomonadaceae Chlamydomonadales Chlorophyceae Chlorophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
AGGACGTCCCCTTACGGGAAT

miRNA*
ACCCGAAGGGGACGTCCTTC

mismatches: 3
bulges: 1

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pre-miRNA
GTAAACTTAGCATGTTTACATACTCCGAAGGAGGACGTCCCCTTACGGGAATATAAATATTAGTGGCAGTGGTACCGCCACTGCCTAGTATATAAATATC
GGCAGTTGGCAGGCAACAATAAATAAATTTGTCCACTAAAATTTATTTACCCGAAGGGGACGTCCTTCGGAGTATATAAATATAGGATTTTAATAC


dot-bracket secondary structure
.((((.((...(((((((.(((((((((...(((((((((((((.((((...((((((.((((((((((..((.(((((((((((..((((....)))).
))))).)))).))..))...........))).))))))).))))))...)))))))))))))))))))))))))).)))))))..)).))))....



SIMILARITIES
miRBase cre-MIR1143: 2e-25

PMRD cre-miR1143: 2e-25

microPC no hits
UniProt sp|P37825|YCX5_CHLRE: 0.00008

RFAM no hits
most similar mature miRNAs

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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