miRNEST 2.0, an integrative microRNA resource :: Browse
Home
Browse miRNAs
Deep-seq predictions
Mirtrons
miRNA genes
Degradomes
Download
Upload
Contact
Back to search results
ABOUT THIS RECORD
ID:
MNEST008829
species:
Populus trichocarpa
miRNA family:
MIRf566
source:
miRNEST
Taxonomy by NCBI:
Populus trichocarpa
Populus
Saliceae
Salicaceae
Malpighiales
fabids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
GATGATGCTGCAACAGCAGCA
miRNA*
CTGCTGTAGCAGCTATCATTTC
mismatches:
2
bulges:
1
View larger
pre-miRNA
ATGAGTAAGGA
GATGATGCTGCAACAGCAGCA
GCAACTTTAGCAACAG
CTGCTGTAGCAGCTATCATTTC
TTGAGCTC
dot-bracket secondary structure
..((((.((((
(((((((((((.((((((((.
((.......))....)
))))))).))))).))))))))
))..))))
SIMILARITIES
miRBase
no hits
PMRD
ptc-miRf11203-akr
:
8e-38
microPC
no hits
UniProt
no hits
RFAM
no hits
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
download this record