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ABOUT THIS RECORD

ID: MNEST008830
species: Populus trichocarpa
miRNA family: MIR396
source: miRNEST

Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TTCCACAGCTTTCTTGAACT

miRNA*
CTCAAGAAAGCTGTGG

mismatches: 3
bulges: 0

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pre-miRNA
TGGTCATGCTTTTCCACAGCTTTCTTGAACTTCTTTGCCTTGCTTAATCTGTGTATATATAGATCACTACATGTACAGCTCCTATATATATAAATATATG
TATGTATAGCGCCATGGAAGCTCAAGAAAGCTGTGG


dot-bracket secondary structure
.(((...)))...(((((((((((((((.(((((..((...((........(((((((.(((....))).)))))))))..(((((((((((......))
))))))))).))...))))).)))))))))))))))



SIMILARITIES
miRBase ptc-MIR396e: 2e-40

PMRD ptc-miR396e: 2e-40

microPC miR396: 2e-34
UniProt no hits

RFAM MIR396: 3e-39
most similar mature miRNAs

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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