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ABOUT THIS RECORD
ID:
MNEST008830
species:
Populus trichocarpa
miRNA family:
MIR396
source:
miRNEST
Taxonomy by NCBI:
Populus trichocarpa
Populus
Saliceae
Salicaceae
Malpighiales
fabids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TTCCACAGCTTTCTTGAACT
miRNA*
CTCAAGAAAGCTGTGG
mismatches:
3
bulges:
0
View larger
pre-miRNA
TGGTCATGCTT
TTCCACAGCTTTCTTGAACT
TCTTTGCCTTGCTTAATCTGTGTATATATAGATCACTACATGTACAGCTCCTATATATATAAATATATG
TATGTATAGCGCCATGGAAG
CTCAAGAAAGCTGTGG
dot-bracket secondary structure
.(((...))).
..(((((((((((((((.((
(((..((...((........(((((((.(((....))).)))))))))..(((((((((((......))
))))))))).))...)))))
.)))))))))))))))
SIMILARITIES
miRBase
ptc-MIR396e
:
2e-40
PMRD
ptc-miR396e
:
2e-40
microPC
miR396
:
2e-34
UniProt
no hits
RFAM
MIR396: 3e-39
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
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