ABOUT THIS RECORDspecies: Populus trichocarpa
miRNA family: MIRf1133
source: miRNEST
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CAAGATCATCCCCCATGCTGT miRNA* TGTTCAGGGGGATGAGCTTGGA mismatches: 4 bulges: 1 |
pre-miRNA
CAGATGGAGCAAGATTATGACATTGGGTCAACCATTCGAGACAAGATCATCCCCCATGCTGTGTCATGGTTTACCGGGGAGGCTGTTCAGGGGGATGAGC
TTGGACTAGATGATGGTGACAATGACGATTATGAAGATATTGA
dot-bracket secondary structure
..((((...((.((((....(((((.....(((((((.((.((((.(((((((((..((.((.((.(((....)))..)).)).))...))))))))).)
)))..)).))..)))))..)))))..)))).))....))))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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CAGATGGAGCAAGATTATGACATTGGGTCAACCATTCGAGACAAGATCATCCCCCATGCTGTGTCATGGTTTACCGGGGAGGCTGTTCAGGGGGATGAGC
TTGGACTAGATGATGGTGACAATGACGATTATGAAGATATTGA
dot-bracket secondary structure
..((((...((.((((....(((((.....(((((((.((.((((.(((((((((..((.((.((.(((....)))..)).)).))...))))))))).)
)))..)).))..)))))..)))))..)))).))....))))..
SIMILARITIES| miRBase no hits PMRD ptc-miRf11461-akr: 6e-31 microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
