miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Back to search results



ABOUT THIS RECORD

ID: MNEST008833
species: Populus trichocarpa
miRNA family: MIRf1170
source: miRNEST

Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
CTTCCCTGTTTCAGGTGGCGG

miRNA*
GTGGGGGAAATAGGGAAGTC

mismatches: 4
bulges: 1

View larger
pre-miRNA
TCTTTCCCATTCTTCCCTGTTTCAGGTGGCGGCAAGACCAAGGGGGCCGCCGGCTTCTAGGCTTTGGGTTTCCGTCCGGTCTGTGCAGCTGTCGGTGGCC
GGTTCGTGTCTTGGCGAAGATGAGGGCCTGCGGGCTGCTCCCTTTCGGTTGGAGGGAAGTGAGCCGGTTCAGGGAGGGAGGCCGTGGGTCTGTCTTGGCT
GGTCTGTGGGGGAAATAGGGAAGTCTGCGTCTG


dot-bracket secondary structure
.......((..((((((((((((.....(((((.((.((((((.((((((((((...((((((.(((....)))...)))))).......))))))))))
..(((((......))))).....((((((((((.((.((((((.((((((...........))))))...))))))...)))))))))))).))))))))
.).))))....))))))))))))..))......



SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record





Liczniki na strone;