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ABOUT THIS RECORD
ID:
MNEST008833
species:
Populus trichocarpa
miRNA family:
MIRf1170
source:
miRNEST
Taxonomy by NCBI:
Populus trichocarpa
Populus
Saliceae
Salicaceae
Malpighiales
fabids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
CTTCCCTGTTTCAGGTGGCGG
miRNA*
GTGGGGGAAATAGGGAAGTC
mismatches:
4
bulges:
1
View larger
pre-miRNA
TCTTTCCCATT
CTTCCCTGTTTCAGGTGGCGG
CAAGACCAAGGGGGCCGCCGGCTTCTAGGCTTTGGGTTTCCGTCCGGTCTGTGCAGCTGTCGGTGGCC
GGTTCGTGTCTTGGCGAAGATGAGGGCCTGCGGGCTGCTCCCTTTCGGTTGGAGGGAAGTGAGCCGGTTCAGGGAGGGAGGCCGTGGGTCTGTCTTGGCT
GGTCT
GTGGGGGAAATAGGGAAGTC
TGCGTCTG
dot-bracket secondary structure
.......((..
((((((((((((.....((((
(.((.((((((.((((((((((...((((((.(((....)))...)))))).......))))))))))
..(((((......))))).....((((((((((.((.((((((.((((((...........))))))...))))))...)))))))))))).))))))))
.).))
))....))))))))))))..
))......
SIMILARITIES
miRBase
no hits
PMRD
no hits
microPC
no hits
UniProt
no hits
RFAM
no hits
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
not a miRNA
Source sequences
download this record