ABOUT THIS RECORDspecies: Populus trichocarpa
miRNA family: MIRf1049
source: miRNEST
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GCCCAGGATCATGTCATGGTG miRNA* TCATGATAGGGAATTGGGAGT mismatches: 3 bulges: 2 |
pre-miRNA
TACATCATGGTACATGTTCATGCATGTACCAGCCCAGGATCATGTCATGGTGTGTGCGTATGCATGGATCTGGTGTACATGCATGCATGCATACATGTCT
GTAGATATCATCACATCATGATAGGGAATTGGGAGTAGGCAGATTTTTAGAATGCCCGTTATTG
dot-bracket secondary structure
.......((((((((((....)))))))))).(((((..((.(((((((((((((((....)))).((..((((((...((((.(((((....))))).)
))).)))))))))))))))))))..)).)))))....((((..((....)).))))........
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TACATCATGGTACATGTTCATGCATGTACCAGCCCAGGATCATGTCATGGTGTGTGCGTATGCATGGATCTGGTGTACATGCATGCATGCATACATGTCT
GTAGATATCATCACATCATGATAGGGAATTGGGAGTAGGCAGATTTTTAGAATGCCCGTTATTG
dot-bracket secondary structure
.......((((((((((....)))))))))).(((((..((.(((((((((((((((....)))).((..((((((...((((.(((((....))))).)
))).)))))))))))))))))))..)).)))))....((((..((....)).))))........
SIMILARITIES| miRBase rno-mir-297: 0.00003 PMRD ptc-miRf11143-akr: 5e-41 microPC no hits | UniProt no hits RFAM Clostridiales-1: 0.0006 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
