ABOUT THIS RECORDspecies: Populus trichocarpa
miRNA family: MIR1448
source: miRNEST
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTTTCCAACGCCTCCCATAC miRNA* ATGGGAGGATTGGACAGGC mismatches: 2 bulges: 1 |
pre-miRNA
GGAGCAAGAGGGAAAGGAAAGAGGGTTGCTGGGAGTTACGGGTATGGGAGGATTGGACAGGCCTGCTTGGCTTTAATTAACCAAAGTCTGTTCTTTCCAA
CGCCTCCCATACCGGTGATCTCCAGCTGTTTCCTCCCTTTCCCTTGCTTGTC
dot-bracket secondary structure
.(((((..(((((((((...(((((..((((((.(((((.(((((((((((.(((((.(((...((..((((((........)))))).))))).)))))
..))))))))))).))))).))))))....)))))))))))))))))))...
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
Source sequences
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GGAGCAAGAGGGAAAGGAAAGAGGGTTGCTGGGAGTTACGGGTATGGGAGGATTGGACAGGCCTGCTTGGCTTTAATTAACCAAAGTCTGTTCTTTCCAA
CGCCTCCCATACCGGTGATCTCCAGCTGTTTCCTCCCTTTCCCTTGCTTGTC
dot-bracket secondary structure
.(((((..(((((((((...(((((..((((((.(((((.(((((((((((.(((((.(((...((..((((((........)))))).))))).)))))
..))))))))))).))))).))))))....)))))))))))))))))))...
SIMILARITIES| miRBase ptc-MIR1448: 7e-34 PMRD ptc-miR1448: 7e-34 microPC miR1448: 2e-34 | UniProt no hits RFAM no hits | most similar mature miRNAs |
Identical with: miR1448 from microPC (MNEST046745) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
Source sequences
download this record
