ABOUT THIS RECORDspecies: Populus trichocarpa
miRNA family: MIR482
source: miRNEST
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCTTGCCTACTCCTCCCATT miRNA* ATGGGAGAGTATGCAAGAAG mismatches: 1 bulges: 2 |
pre-miRNA
GGCCGGGGGAGGGAAACGGAGAGTCTTAGCAAGTCTTTGGAGATGGGAGAGTATGCAAGAAGGAAAAAATCATGATTTAATATCCCTTCTTGCCTACTCC
TCCCATTCCATCTGCTTTCTGCGACTCCTCTCTTTCCTTATTCTAGA
dot-bracket secondary structure
....((((.(((((((.((((((((.(((.((((...((((.(((((((((((.(((((((((.....................))))))))).)))).)
))))))))))...)))).))).)))).)))).))))))).))))...
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
Source sequences
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GGCCGGGGGAGGGAAACGGAGAGTCTTAGCAAGTCTTTGGAGATGGGAGAGTATGCAAGAAGGAAAAAATCATGATTTAATATCCCTTCTTGCCTACTCC
TCCCATTCCATCTGCTTTCTGCGACTCCTCTCTTTCCTTATTCTAGA
dot-bracket secondary structure
....((((.(((((((.((((((((.(((.((((...((((.(((((((((((.(((((((((.....................))))))))).)))).)
))))))))))...)))).))).)))).)))).))))))).))))...
SIMILARITIES| miRBase ptc-MIR482: 2e-46 PMRD no hits microPC miR482: 2e-34 | UniProt no hits RFAM no hits | most similar mature miRNAs |
Identical with: miR482 from microPC (MNEST046388) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
Source sequences
download this record
