ABOUT THIS RECORDspecies: Populus trichocarpa
miRNA family: MIRf1205
source: miRNEST
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GGCAGAGCATGGATGGAGCTA miRNA* GCTCTACCCATGCACTGCCTC mismatches: 2 bulges: 0 |
pre-miRNA
GACAGATGAAGACGGGGAACAGGCAGAGCATGGATGGAGCTACTAACAGAAGTACTTGTTTTGGCTCTACCCATGCACTGCCTCTTCCCTGGCTTGTGGC
TC
dot-bracket secondary structure
........(((.(((((((.((((((.((((((.((((((((..(((((......))))).)))))))).)))))).)))))).))))))).))).....
..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
Source sequences
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GACAGATGAAGACGGGGAACAGGCAGAGCATGGATGGAGCTACTAACAGAAGTACTTGTTTTGGCTCTACCCATGCACTGCCTCTTCCCTGGCTTGTGGC
TC
dot-bracket secondary structure
........(((.(((((((.((((((.((((((.((((((((..(((((......))))).)))))))).)))))).)))))).))))))).))).....
..
SIMILARITIES| miRBase ptc-MIR408: 4e-53 PMRD ptc-miR408: 4e-53 microPC miR408: 5e-43 | UniProt no hits RFAM MIR408: 6e-52 | most similar mature miRNAs |
Identical with: miR408 from microPC (MNEST046505) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
Source sequences
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